Alternatively append "+set fs_libpath <libpath>" to the command line when starting unvanquished where libpath is the path to the git repository. My command line for starting the source build of unvanquished is like this:
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./daemon +set fs_libpath ~/src/unvanquished +set fs_basepath /opt/unvanquished
~/src/unvanquished is the root of the repository and /opt/unvanquished is the root of the default installation that contains assets and maps.